
/*
 *
 *  This file is part of the SIRIUS library for analyzing MS and MS/MS data
 *
 *  Copyright (C) 2013-2020 Kai Dührkop, Markus Fleischauer, Marcus Ludwig, Martin A. Hoffman, Fleming Kretschmer and Sebastian Böcker,
 *  Chair of Bioinformatics, Friedrich-Schilller University.
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 3 of the License, or (at your option) any later version.
 *
 *  This library is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License along with SIRIUS. If not, see <https://www.gnu.org/licenses/lgpl-3.0.txt>
 */

package de.unijena.bioinf.FragmentationTreeConstruction.computation.graph;

import de.unijena.bioinf.ChemistryBase.chem.Ionization;
import de.unijena.bioinf.ChemistryBase.ms.ft.FGraph;
import de.unijena.bioinf.ChemistryBase.ms.ft.model.Decomposition;
import de.unijena.bioinf.sirius.ProcessedInput;
import de.unijena.bioinf.sirius.ProcessedPeak;

import java.util.Set;

/**
 * @author Kai Dührkop
 */
public interface GraphBuilder {
    FGraph initializeEmptyGraph(ProcessedInput input);

    FGraph addRoot(FGraph graph, ProcessedPeak peak, Iterable<Decomposition> pmds);

    FGraph fillGraph(ProcessedInput input, FGraph graph, Set<Ionization> allowedIonModes, LossValidator validator);
}
